Research workbench
AlphaFold monomer V2.0 prediction for microsomal triglyceride transfer protein large subunit (P55157)
Analyse AlphaFold monomer V2.0 prediction for microsomal triglyceride transfer protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55157
- Type
- protein
- Length
- 894 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4450b8770f8579152a0dD84fBd7622763A5eC221
- Molecule
- Microsomal triglyceride transfer protein large subunit
- UniProt
- P55157
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 33% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Microsomal triglyceride transfer protein large subunit | protein | 894 | 33% helix, 35% strand | P55157 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 631 | 0.81 | 0.86 | 49 | empty |
| 2 | 1093 | 0.80 | 0.81 | 123 | empty |
| 3 | 256 | 0.75 | 0.88 | 36 | empty |
| 4 | 567 | 0.61 | 0.74 | 52 | empty |
| 5 | 73 | 0.46 | 0.82 | 22 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6I7S · Microsomal triglyceride transfer protein · an experimental structure of the same protein · chain A against H, TM-score 0.93
- 6I7S · Microsomal triglyceride transfer protein · an experimental structure of the same protein · chain A against H, TM-score 0.93
- 8EOJ · Microsomal triglyceride transfer protein · an experimental structure of the same protein · chain A against B, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55157
- Elsewhere: UniProt P55157 · AlphaFold DB P55157
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