Research workbench
AlphaFold monomer V2.0 prediction for 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (A8WMD5)
Analyse AlphaFold monomer V2.0 prediction for 1,2-dihydroxy-3-keto-5-methylthiopentene… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A8WMD5
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc0F878C3f3E2a1874e2A6daC80d429e553DdB0D5
- Molecule
- 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
- UniProt
- A8WMD5
- Pockets
- 3 · best druggability 0.67
Structure
1 distinct chain · 23% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 | protein | 178 | 23% helix, 34% strand | A8WMD5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.67 | 0.85 | 32 | empty |
| 2 | 84 | 0.35 | 0.75 | 19 | empty |
| 3 | 50 | 0.29 | 0.76 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8WMD5
- Elsewhere: UniProt A8WMD5 · AlphaFold DB A8WMD5
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