Research workbench
AlphaFold monomer V2.0 prediction for peptidoglycan D,D-transpeptidase mrda (P0AD67)
Analyse AlphaFold monomer V2.0 prediction for peptidoglycan D,D-transpeptidase mrda… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AD67
- Type
- protein
- Length
- 633 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7c75F0f7d6d136A2b8D4C6C6e9b3D8a697949DF1
- Molecule
- Peptidoglycan D,D-transpeptidase mrda
- UniProt
- P0AD67
- Pockets
- 6 · best druggability 0.63
Structure
1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan D,D-transpeptidase mrda | protein | 633 | 42% helix, 21% strand | P0AD67 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 278 | 0.63 | 0.80 | 35 | empty |
| 2 | 444 | 0.61 | 0.76 | 47 | empty |
| 3 | 219 | 0.48 | 0.74 | 26 | empty |
| 4 | 67 | 0.35 | 0.77 | 16 | empty |
| 5 | 59 | 0.28 | 0.74 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AD67
- Elsewhere: UniProt P0AD67 · AlphaFold DB P0AD67
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