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AlphaFold monomer V2.0 prediction for helicase protein MOM1 (Q9M658)

Analyse AlphaFold monomer V2.0 prediction for helicase protein MOM1 (Q9M658) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9M658
Type: protein
Length: 2,001 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
Molecule: Helicase protein MOM1
UniProt: Q9M658
Pockets: 10 · best druggability 0.67

Structure

1 distinct chain · 24% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Helicase protein MOM1	protein	2001	24% helix, 2% strand	Q9M658

Pockets

10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	597	0.67	0.76	48	empty
2	233	0.55	0.77	38	empty
3	183	0.52	0.78	28	empty
4	202	0.50	0.76	24	empty
5	217	0.50	0.75	26	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3VEM · Structural basis of transcriptional gene silencing mediated by Arabidopsis MOM1 · an experimental structure of the same protein · chain A against A, TM-score 0.04
3VEM · Structural basis of transcriptional gene silencing mediated by arabidopsis MOM1 · an experimental structure of the same protein · chain A against A, TM-score 0.04

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9M658
Elsewhere: UniProt Q9M658 · AlphaFold DB Q9M658

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