Research workbench

AlphaFold monomer V2.0 prediction for tRNA modification GTPase mnme (Q8YN91)

Analyse AlphaFold monomer V2.0 prediction for tRNA modification GTPase mnme (Q8YN91) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q8YN91
Type: protein
Length: 459 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x58cbba95a543954Ec48b693257966aFbEE57af84
Molecule: TRNA modification GTPase mnme
UniProt: Q8YN91
Pockets: 5 · best druggability 0.57

Structure

1 distinct chain · 46% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA modification GTPase mnme	protein	459	46% helix, 16% strand	Q8YN91

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.57	0.81	34	empty
2	132	0.50	0.80	30	empty
3	101	0.35	0.74	20	empty
4	56	0.27	0.73	14	empty
5	55	0.27	0.73	11	empty

Compared structures

3GEH · Crystal structure of mnme from nostoc in complex with GDP, folinic acid and zn · an experimental structure of the same protein · chain A against A, TM-score 0.93
3GEH · Crystal structure of MnmE from Nostoc in complex with GDP, FOLINIC ACID and ZN · an experimental structure of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8YN91
Elsewhere: UniProt Q8YN91 · AlphaFold DB Q8YN91

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