Research workbench
AlphaFold monomer V2.0 prediction for tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (A5IJD4)
Analyse AlphaFold monomer V2.0 prediction for tRNA-2-methylthio-N(6)-dimethylallyladenos… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A5IJD4
- Type
- protein
- Length
- 443 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB6aE45B1399Ef638D7fe596FD0B94A55c207203e
- Molecule
- TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase
- UniProt
- A5IJD4
- Pockets
- 3 · best druggability 0.80
Structure
1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | protein | 443 | 38% helix, 22% strand | A5IJD4 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 747 | 0.80 | 0.84 | 66 | empty |
| 2 | 129 | 0.48 | 0.79 | 24 | empty |
| 3 | 83 | 0.36 | 0.76 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5IJD4
- Elsewhere: UniProt A5IJD4 · AlphaFold DB A5IJD4
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