Research workbench
AlphaFold monomer V2.0 prediction for group II intron-encoded protein ltra (P0A3U1)
Analyse AlphaFold monomer V2.0 prediction for group II intron-encoded protein ltra… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A3U1
- Type
- protein
- Length
- 599 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x738c1929c69B751bD0Be0B962D9bac20B631aAc6
- Molecule
- Group II intron-encoded protein ltra
- UniProt
- P0A3U1
- Pockets
- 10 · best druggability 0.57
Structure
1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Group II intron-encoded protein ltra | protein | 599 | 45% helix, 16% strand | P0A3U1 |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 324 | 0.57 | 0.76 | 29 | empty |
| 2 | 428 | 0.57 | 0.74 | 43 | empty |
| 3 | 55 | 0.50 | 0.87 | 18 | empty |
| 4 | 154 | 0.42 | 0.75 | 22 | empty |
| 5 | 79 | 0.42 | 0.79 | 18 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A3U1
- Elsewhere: UniProt P0A3U1 · AlphaFold DB P0A3U1
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