Research workbench
AlphaFold monomer V2.0 prediction for probable lysosomal cobalamin transporter (Q54KD1)
Analyse AlphaFold monomer V2.0 prediction for probable lysosomal cobalamin transporter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q54KD1
- Type
- protein
- Length
- 510 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa8003B255b9AFb24F952260d92Ca9AeCD5E715B2
- Molecule
- Probable lysosomal cobalamin transporter
- UniProt
- Q54KD1
- Pockets
- 5 · best druggability 0.70
Structure
1 distinct chain · 74% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable lysosomal cobalamin transporter | protein | 510 | 74% helix, 4% strand | Q54KD1 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.70 | 0.97 | 23 | empty |
| 2 | 555 | 0.61 | 0.74 | 53 | empty |
| 3 | 282 | 0.55 | 0.75 | 26 | empty |
| 4 | 119 | 0.48 | 0.80 | 25 | empty |
| 5 | 86 | 0.32 | 0.73 | 13 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54KD1
- Elsewhere: UniProt Q54KD1 · AlphaFold DB Q54KD1
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