Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase B (Q6DB58)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase B (Q6DB58) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6DB58
- Type
- protein
- Length
- 563 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
- Molecule
- DNA ligase B
- UniProt
- Q6DB58
- Pockets
- 5 · best druggability 0.78
Structure
1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase B | protein | 563 | 37% helix, 22% strand | Q6DB58 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 740 | 0.78 | 0.82 | 57 | empty |
| 2 | 252 | 0.61 | 0.80 | 33 | empty |
| 3 | 245 | 0.48 | 0.73 | 21 | empty |
| 4 | 77 | 0.39 | 0.78 | 12 | empty |
| 5 | 96 | 0.36 | 0.75 | 20 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6DB58
- Elsewhere: UniProt Q6DB58 · AlphaFold DB Q6DB58
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