Research workbench
AlphaFold monomer V2.0 prediction for effector protein HOPM1 (Q887D0)
Analyse AlphaFold monomer V2.0 prediction for effector protein HOPM1 (Q887D0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q887D0
- Type
- protein
- Length
- 712 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Effector protein HOPM1
- UniProt
- Q887D0
- Pockets
- 8 · best druggability 0.72
Structure
1 distinct chain · 67% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Effector protein HOPM1 | protein | 712 | 67% helix, 3% strand | Q887D0 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 410 | 0.72 | 0.83 | 31 | empty |
| 2 | 794 | 0.72 | 0.78 | 76 | empty |
| 3 | 367 | 0.58 | 0.76 | 54 | empty |
| 4 | 275 | 0.57 | 0.77 | 34 | empty |
| 5 | 230 | 0.50 | 0.75 | 28 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q887D0
- Elsewhere: UniProt Q887D0 · AlphaFold DB Q887D0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.