Research workbench
AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (P0A0K8)
Analyse AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (P0A0K8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A0K8
- Type
- protein
- Length
- 644 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa0269D2f8346f93BD986199F0B310E8F43873427
- Molecule
- DNA gyrase subunit B
- UniProt
- P0A0K8
- Pockets
- 5 · best druggability 0.76
Structure
1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA gyrase subunit B | protein | 644 | 41% helix, 21% strand | P0A0K8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 980 | 0.76 | 0.79 | 87 | empty |
| 2 | 350 | 0.58 | 0.76 | 36 | empty |
| 3 | 71 | 0.43 | 0.81 | 13 | empty |
| 4 | 124 | 0.42 | 0.75 | 18 | empty |
| 5 | 58 | 0.32 | 0.76 | 15 | empty |
Compared structures
- 4URM · Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 4URM · Crystal structure of staph gyraseb 24KDA in complex with kibdelomycin · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 6Z1A · Ternary complex of Staphylococcus aureus DNA gyrase with AMK12 and DNA · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 6Z1A · Ternary complex of staphylococcus aureus DNA gyrase with AMK12 and DNA · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 7MVS · DNA gyrase complexed with uncleaved DNA and Compound 7 to 2.6A resolution · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 7MVS · DNA gyrase complexed with uncleaved DNA and compound 7 to 2.6A resolution · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 4PLB · Crystal Structure of S.A. gyrase-AM8191 complex · an experimental structure of the same protein · chain A against D, TM-score 0.30
- 4PLB · Crystal structure of S.A. gyrase-AM8191 complex · an experimental structure of the same protein · chain A against D, TM-score 0.30
- 5BS3 · Crystal structure of S.A. gyrase in complex with compound 7 · an experimental structure of the same protein · chain A against B, TM-score 0.30
- 5BS3 · Crystal Structure of S.A. gyrase in complex with Compound 7 · an experimental structure of the same protein · chain A against B, TM-score 0.30
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A0K8
- Elsewhere: UniProt P0A0K8 · AlphaFold DB P0A0K8
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