Research workbench
AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, kainate 2 (Q13002)
Analyse AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, kainate 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q13002
- Type
- protein
- Length
- 908 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- Glutamate receptor ionotropic, kainate 2
- UniProt
- Q13002
- Pockets
- 11 · best druggability 0.74
Structure
1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate receptor ionotropic, kainate 2 | protein | 908 | 43% helix, 17% strand | Q13002 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 841 | 0.74 | 0.79 | 65 | empty |
| 2 | 565 | 0.66 | 0.76 | 61 | empty |
| 3 | 166 | 0.65 | 0.86 | 30 | empty |
| 4 | 60 | 0.51 | 0.86 | 18 | empty |
| 5 | 143 | 0.49 | 0.78 | 23 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3QXM · Crystal Structure of Human GluK2 Ligand-Binding Core in Complex with Novel Marine-Derived… · an experimental structure of the same protein · chain A against B, TM-score 0.28
- 3QXM · Crystal structure of human GLUK2 ligand-binding core in complex with novel marine-derived… · an experimental structure of the same protein · chain A against B, TM-score 0.28
- 5CMM · Crystal structure of the GLUK2EM lbd dimer assembly complex with 2S, 4R-4-methylglutamate · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5CMM · Crystal structure of the GluK2EM LBD dimer assembly complex with 2S,4R-4-methylglutamate · an experimental structure of the same protein · chain A against A, TM-score 0.28
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13002
- Elsewhere: UniProt Q13002 · AlphaFold DB Q13002
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