Research workbench
AlphaFold monomer V2.0 prediction for glycerophosphodiester phosphodiesterase GDPDL6 (Q9FGT9)
Analyse AlphaFold monomer V2.0 prediction for glycerophosphodiester phosphodiesterase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9FGT9
- Type
- protein
- Length
- 753 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x605d3052093391F2D57b33217931db4627F892dC
- Molecule
- Glycerophosphodiester phosphodiesterase GDPDL6
- UniProt
- Q9FGT9
- Pockets
- 7 · best druggability 0.58
Structure
1 distinct chain · 31% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerophosphodiester phosphodiesterase GDPDL6 | protein | 753 | 31% helix, 19% strand | Q9FGT9 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.58 | 0.77 | 46 | empty |
| 2 | 362 | 0.57 | 0.75 | 40 | empty |
| 3 | 188 | 0.46 | 0.75 | 29 | empty |
| 4 | 130 | 0.44 | 0.76 | 28 | empty |
| 5 | 108 | 0.43 | 0.77 | 26 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FGT9
- Elsewhere: UniProt Q9FGT9 · AlphaFold DB Q9FGT9
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