Research workbench
AlphaFold monomer V2.0 prediction for glycerophosphodiester phosphodiesterase GDPDL5 (F4JEQ1)
Analyse AlphaFold monomer V2.0 prediction for glycerophosphodiester phosphodiesterase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- F4JEQ1
- Type
- protein
- Length
- 729 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Glycerophosphodiester phosphodiesterase GDPDL5
- UniProt
- F4JEQ1
- Pockets
- 9 · best druggability 0.55
Structure
1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerophosphodiester phosphodiesterase GDPDL5 | protein | 729 | 35% helix, 17% strand | F4JEQ1 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.55 | 0.80 | 33 | empty |
| 2 | 331 | 0.53 | 0.74 | 36 | empty |
| 3 | 253 | 0.52 | 0.76 | 36 | empty |
| 4 | 113 | 0.45 | 0.78 | 20 | empty |
| 5 | 98 | 0.45 | 0.79 | 25 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F4JEQ1
- Elsewhere: UniProt F4JEQ1 · AlphaFold DB F4JEQ1
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