Research workbench
AlphaFold monomer V2.0 prediction for glycerophosphocholine phosphodiesterase GPCPD1 (Q8C0L9)
Analyse AlphaFold monomer V2.0 prediction for glycerophosphocholine phosphodiesterase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8C0L9
- Type
- protein
- Length
- 675 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x40B9C9d5F084D34d026E9d5Dd10501AcdF6d6152
- Molecule
- Glycerophosphocholine phosphodiesterase GPCPD1
- UniProt
- Q8C0L9
- Pockets
- 11 · best druggability 0.68
Structure
1 distinct chain · 21% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerophosphocholine phosphodiesterase GPCPD1 | protein | 675 | 21% helix, 31% strand | Q8C0L9 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 317 | 0.68 | 0.82 | 33 | empty |
| 2 | 504 | 0.62 | 0.75 | 46 | empty |
| 3 | 287 | 0.62 | 0.80 | 33 | empty |
| 4 | 208 | 0.57 | 0.79 | 26 | empty |
| 5 | 249 | 0.56 | 0.78 | 29 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8C0L9
- Elsewhere: UniProt Q8C0L9 · AlphaFold DB Q8C0L9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.