Research workbench
AlphaFold monomer V2.0 prediction for heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 (O04046)
Analyse AlphaFold monomer V2.0 prediction for heterodimeric geranylgeranyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O04046
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x738c1929c69B751bD0Be0B962D9bac20B631aAc6
- Molecule
- Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
- UniProt
- O04046
- Pockets
- 5 · best druggability 0.78
Structure
1 distinct chain · 71% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 | protein | 376 | 71% helix, 2% strand | O04046 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 545 | 0.78 | 0.85 | 47 | empty |
| 2 | 102 | 0.47 | 0.81 | 15 | empty |
| 3 | 131 | 0.39 | 0.74 | 17 | empty |
| 4 | 102 | 0.37 | 0.74 | 22 | empty |
| 5 | 128 | 0.37 | 0.73 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04046
- Elsewhere: UniProt O04046 · AlphaFold DB O04046
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