Research workbench
AlphaFold monomer V2.0 prediction for ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B (O66766)
Analyse AlphaFold monomer V2.0 prediction for ASPARTYL/GLUTAMYL-TRNA(ASN/GLN)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O66766
- Type
- protein
- Length
- 478 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B
- UniProt
- O66766
- Pockets
- 6 · best druggability 0.69
Structure
1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B | protein | 478 | 40% helix, 21% strand | O66766 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 706 | 0.69 | 0.77 | 55 | empty |
| 2 | 150 | 0.51 | 0.79 | 17 | empty |
| 3 | 87 | 0.42 | 0.79 | 15 | empty |
| 4 | 51 | 0.31 | 0.77 | 12 | empty |
| 5 | 64 | 0.28 | 0.73 | 13 | empty |
Compared structures
- 3H0L · Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against E, TM-score 0.85
- 3H0L · Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against E, TM-score 0.85
- 3H0M · Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against K, TM-score 0.85
- 3H0M · Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against K, TM-score 0.85
- 3H0R · Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against E, TM-score 0.85
- 3H0R · Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus · an experimental structure of the same protein · chain A against E, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O66766
- Elsewhere: UniProt O66766 · AlphaFold DB O66766
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