Research workbench
AlphaFold monomer V2.0 prediction for endogenous retrovirus group K member 6 gag polyprotein (Q7LDI9)
Analyse AlphaFold monomer V2.0 prediction for endogenous retrovirus group K member 6… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7LDI9
- Type
- protein
- Length
- 666 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Endogenous retrovirus group K member 6 gag polyprotein
- UniProt
- Q7LDI9
- Pockets
- 6 · best druggability 0.54
Structure
1 distinct chain · 39% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endogenous retrovirus group K member 6 gag polyprotein | protein | 666 | 39% helix, 2% strand | Q7LDI9 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 238 | 0.54 | 0.76 | 39 | empty |
| 2 | 140 | 0.44 | 0.75 | 27 | empty |
| 3 | 107 | 0.42 | 0.77 | 17 | empty |
| 4 | 81 | 0.36 | 0.76 | 17 | empty |
| 5 | 68 | 0.34 | 0.76 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7LDI9
- Elsewhere: UniProt Q7LDI9 · AlphaFold DB Q7LDI9
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