Research workbench
AlphaFold monomer V2.0 prediction for late endosome and vacuole interface protein 11 (P53246)
Analyse AlphaFold monomer V2.0 prediction for late endosome and vacuole interface… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53246
- Type
- protein
- Length
- 860 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Late endosome and vacuole interface protein 11
- UniProt
- P53246
- Pockets
- 10 · best druggability 0.73
Structure
1 distinct chain · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Late endosome and vacuole interface protein 11 | protein | 860 | 47% helix, 8% strand | P53246 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 817 | 0.73 | 0.78 | 68 | empty |
| 2 | 843 | 0.68 | 0.75 | 71 | empty |
| 3 | 338 | 0.56 | 0.75 | 30 | empty |
| 4 | 347 | 0.53 | 0.73 | 33 | empty |
| 5 | 114 | 0.50 | 0.80 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53246
- Elsewhere: UniProt P53246 · AlphaFold DB P53246
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