Research workbench
AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase (Q8FKB9)
Analyse AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8FKB9
- Type
- protein
- Length
- 620 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9d2ff7267DAbeF5314975b14749fa9ca05f4880a
- Molecule
- 1-deoxy-D-xylulose-5-phosphate synthase
- UniProt
- Q8FKB9
- Pockets
- 5 · best druggability 0.75
Structure
1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1-deoxy-D-xylulose-5-phosphate synthase | protein | 620 | 41% helix, 16% strand | Q8FKB9 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.75 | 0.82 | 61 | empty |
| 2 | 62 | 0.38 | 0.79 | 14 | empty |
| 3 | 72 | 0.33 | 0.75 | 18 | empty |
| 4 | 63 | 0.28 | 0.73 | 14 | empty |
| 5 | 53 | 0.26 | 0.73 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8FKB9
- Elsewhere: UniProt Q8FKB9 · AlphaFold DB Q8FKB9
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