Research workbench
AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase (B6YRV5)
Analyse AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B6YRV5
- Type
- protein
- Length
- 632 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7c75F0f7d6d136A2b8D4C6C6e9b3D8a697949DF1
- Molecule
- 1-deoxy-D-xylulose-5-phosphate synthase
- UniProt
- B6YRV5
- Pockets
- 3 · best druggability 0.77
Structure
1 distinct chain · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1-deoxy-D-xylulose-5-phosphate synthase | protein | 632 | 43% helix, 16% strand | B6YRV5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 761 | 0.77 | 0.81 | 77 | empty |
| 2 | 704 | 0.73 | 0.79 | 51 | empty |
| 3 | 105 | 0.42 | 0.77 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6YRV5
- Elsewhere: UniProt B6YRV5 · AlphaFold DB B6YRV5
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