Research workbench
AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase (A0KNF9)
Analyse AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0KNF9
- Type
- protein
- Length
- 621 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x98B59d43862b13d55e7D872d5Bb6D8b35CdEafa1
- Molecule
- 1-deoxy-D-xylulose-5-phosphate synthase
- UniProt
- A0KNF9
- Pockets
- 5 · best druggability 0.77
Structure
1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1-deoxy-D-xylulose-5-phosphate synthase | protein | 621 | 45% helix, 16% strand | A0KNF9 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 511 | 0.77 | 0.85 | 63 | empty |
| 2 | 110 | 0.44 | 0.78 | 19 | empty |
| 3 | 79 | 0.35 | 0.75 | 15 | empty |
| 4 | 64 | 0.32 | 0.75 | 10 | empty |
| 5 | 64 | 0.29 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KNF9
- Elsewhere: UniProt A0KNF9 · AlphaFold DB A0KNF9
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