Research workbench
AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Q9X5F2)
Analyse AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose 5-phosphate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9X5F2
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9CD27A59A769D26Ab678c0C0D08E99069bEaB2fd
- Molecule
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase
- UniProt
- Q9X5F2
- Pockets
- 4 · best druggability 0.70
Structure
1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | protein | 388 | 48% helix, 15% strand | Q9X5F2 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 354 | 0.70 | 0.83 | 60 | empty |
| 2 | 125 | 0.49 | 0.79 | 19 | empty |
| 3 | 74 | 0.41 | 0.79 | 18 | empty |
| 4 | 60 | 0.32 | 0.77 | 18 | empty |
Compared structures
- 1R0K · Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase from zymomonas… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1R0K · Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase from Zymomonas… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1R0L · 1-deoxy-D-xylulose 5-phosphate reductoisomerase from zymomonas mobilis in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 1R0L · 1-deoxy-D-xylulose 5-phosphate reductoisomerase from zymomonas mobilis in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X5F2
- Elsewhere: UniProt Q9X5F2 · AlphaFold DB Q9X5F2
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