Research workbench
AlphaFold monomer V2.0 prediction for double homeobox protein 4-like protein 4 (P0CJ87)
Analyse AlphaFold monomer V2.0 prediction for double homeobox protein 4-like protein 4… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0CJ87
- Type
- protein
- Length
- 422 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xba5fB0D21f0B04Cdf2D70FE38daDdF696FDB8152
- Molecule
- Double homeobox protein 4-like protein 4
- UniProt
- P0CJ87
- Pockets
- 3 · best druggability 0.66
Structure
1 distinct chain · 26% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Double homeobox protein 4-like protein 4 | protein | 422 | 26% helix, 0% strand | P0CJ87 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 708 | 0.66 | 0.75 | 66 | empty |
| 2 | 118 | 0.41 | 0.76 | 17 | empty |
| 3 | 67 | 0.34 | 0.76 | 10 | empty |
Compared structures
- 5ZFY · Crystal structure of human DUX4 homeodomains bound to A12C DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5ZFY · Crystal structure of human DUX4 homeodomains bound to A12C DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5ZFW · Crystal structure of human DUX4 homeodomains bound to A11G DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5ZFW · Crystal structure of human DUX4 homeodomains bound to A11G DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5ZFZ · Crystal structure of human DUX4 homeodomains bound to A12T DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5ZFZ · Crystal structure of human DUX4 homeodomains bound to A12T DNA mutant · an experimental structure of the same protein · chain A against A, TM-score 0.29
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CJ87
- Elsewhere: UniProt P0CJ87 · AlphaFold DB P0CJ87
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