Research workbench

AlphaFold monomer V2.0 prediction for DNA polymerase III subunit alpha (P63978)

Analyse AlphaFold monomer V2.0 prediction for DNA polymerase III subunit alpha (P63978) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P63978
Type: protein
Length: 1,184 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
Molecule: DNA polymerase III subunit alpha
UniProt: P63978
Pockets: 11 · best druggability 0.71

Structure

1 distinct chain · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA polymerase III subunit alpha	protein	1184	47% helix, 15% strand	P63978

Pockets

11 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	614	0.71	0.79	56	empty
2	717	0.69	0.76	53	empty
3	63	0.43	0.82	13	empty
4	140	0.38	0.73	27	empty
5	90	0.36	0.75	19	empty

Compared structures

8DJQ · Sliding-clamp-DnaE1 peptide · an experimental structure of the same protein · chain A against G, TM-score 0.01

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63978
Elsewhere: UniProt P63978 · AlphaFold DB P63978

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