Research workbench
AlphaFold monomer V2.0 prediction for DNA polymerase III subunit alpha (Q9PPI9)
Analyse AlphaFold monomer V2.0 prediction for DNA polymerase III subunit alpha (Q9PPI9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9PPI9
- Type
- protein
- Length
- 1,200 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x92eF3937744b956cB1E76Cc4107c8FF17A74F07d
- Molecule
- DNA polymerase III subunit alpha
- UniProt
- Q9PPI9
- Pockets
- 13 · best druggability 0.70
Structure
1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase III subunit alpha | protein | 1200 | 48% helix, 15% strand | Q9PPI9 |
Pockets
13 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 588 | 0.70 | 0.78 | 53 | empty |
| 2 | 408 | 0.67 | 0.79 | 39 | empty |
| 3 | 494 | 0.65 | 0.77 | 55 | empty |
| 4 | 99 | 0.44 | 0.79 | 18 | empty |
| 5 | 64 | 0.40 | 0.80 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PPI9
- Elsewhere: UniProt Q9PPI9 · AlphaFold DB Q9PPI9
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