Research workbench
AlphaFold monomer V2.0 prediction for DNA polymerase II large subunit (A0B8K5)
Analyse AlphaFold monomer V2.0 prediction for DNA polymerase II large subunit (A0B8K5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0B8K5
- Type
- protein
- Length
- 1,109 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x16bAB96c6aDA76E246D4ba74AE1dCaf6B052cC5a
- Molecule
- DNA polymerase II large subunit
- UniProt
- A0B8K5
- Pockets
- 7 · best druggability 0.68
Structure
1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase II large subunit | protein | 1109 | 40% helix, 17% strand | A0B8K5 |
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 738 | 0.68 | 0.76 | 76 | empty |
| 2 | 162 | 0.61 | 0.84 | 27 | empty |
| 3 | 283 | 0.59 | 0.78 | 32 | empty |
| 4 | 262 | 0.52 | 0.75 | 32 | empty |
| 5 | 180 | 0.52 | 0.78 | 33 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0B8K5
- Elsewhere: UniProt A0B8K5 · AlphaFold DB A0B8K5
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