Research workbench
AlphaFold monomer V2.0 prediction for alpha-dioxygenase 1 (Q9SGH6)
Analyse AlphaFold monomer V2.0 prediction for alpha-dioxygenase 1 (Q9SGH6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9SGH6
- Type
- protein
- Length
- 639 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Alpha-dioxygenase 1
- UniProt
- Q9SGH6
- Pockets
- 9 · best druggability 0.87
Structure
1 distinct chain · 48% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-dioxygenase 1 | protein | 639 | 48% helix, 9% strand | Q9SGH6 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 460 | 0.87 | 0.94 | 43 | empty |
| 2 | 137 | 0.73 | 0.92 | 32 | empty |
| 3 | 297 | 0.54 | 0.76 | 43 | empty |
| 4 | 228 | 0.53 | 0.77 | 27 | empty |
| 5 | 127 | 0.50 | 0.80 | 21 | empty |
Compared structures
- 4HHS · Crystal Structure of fatty acid alpha-dioxygenase (Arabidopsis thaliana) · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 4HHS · Crystal structure of fatty acid alpha-dioxygenase (arabidopsis thaliana) · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 4HHR · Crystal Structure of fatty acid alpha-dioxygenase (Arabidopsis thaliana) · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 4HHR · Crystal structure of fatty acid alpha-dioxygenase (arabidopsis thaliana) · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SGH6
- Elsewhere: UniProt Q9SGH6 · AlphaFold DB Q9SGH6
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