Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase (Q2FFJ1)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase (Q2FFJ1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2FFJ1
- Type
- protein
- Length
- 667 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- DNA ligase
- UniProt
- Q2FFJ1
- Pockets
- 5 · best druggability 0.79
Structure
1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase | protein | 667 | 40% helix, 22% strand | Q2FFJ1 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1122 | 0.79 | 0.81 | 93 | empty |
| 2 | 398 | 0.64 | 0.78 | 33 | empty |
| 3 | 347 | 0.59 | 0.77 | 40 | empty |
| 4 | 178 | 0.53 | 0.79 | 26 | empty |
| 5 | 141 | 0.50 | 0.80 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FFJ1
- Elsewhere: UniProt Q2FFJ1 · AlphaFold DB Q2FFJ1
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