Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase (Q2SRE1)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase (Q2SRE1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2SRE1
- Type
- protein
- Length
- 668 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xeDe6FdB486740aA776Ade3705F18bEa30887dA64
- Molecule
- DNA ligase
- UniProt
- Q2SRE1
- Pockets
- 8 · best druggability 0.77
Structure
1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase | protein | 668 | 40% helix, 21% strand | Q2SRE1 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 983 | 0.77 | 0.79 | 81 | empty |
| 2 | 417 | 0.63 | 0.78 | 36 | empty |
| 3 | 265 | 0.53 | 0.76 | 22 | empty |
| 4 | 226 | 0.50 | 0.76 | 26 | empty |
| 5 | 105 | 0.43 | 0.78 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2SRE1
- Elsewhere: UniProt Q2SRE1 · AlphaFold DB Q2SRE1
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