Research workbench

AlphaFold monomer V2.0 prediction for DNA ligase (B1M575)

Analyse AlphaFold monomer V2.0 prediction for DNA ligase (B1M575) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: B1M575
Type: protein
Length: 810 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x71112d4fF7ebb3b617963c05f052289e073082FD
Molecule: DNA ligase
UniProt: B1M575
Pockets: 9 · best druggability 0.82

Structure

1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA ligase	protein	810	41% helix, 19% strand	B1M575

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	864	0.82	0.85	99	empty
2	270	0.60	0.79	30	empty
3	366	0.57	0.75	47	empty
4	302	0.55	0.75	25	empty
5	123	0.42	0.76	26	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1M575
Elsewhere: UniProt B1M575 · AlphaFold DB B1M575

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