Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase (A9CIB3)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase (A9CIB3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A9CIB3
- Type
- protein
- Length
- 724 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- DNA ligase
- UniProt
- A9CIB3
- Pockets
- 5 · best druggability 0.76
Structure
1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase | protein | 724 | 38% helix, 21% strand | A9CIB3 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 558 | 0.76 | 0.83 | 63 | empty |
| 2 | 519 | 0.67 | 0.78 | 52 | empty |
| 3 | 412 | 0.61 | 0.77 | 35 | empty |
| 4 | 127 | 0.48 | 0.79 | 20 | empty |
| 5 | 51 | 0.35 | 0.79 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9CIB3
- Elsewhere: UniProt A9CIB3 · AlphaFold DB A9CIB3
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