Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase (A0KHL9)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase (A0KHL9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0KHL9
- Type
- protein
- Length
- 668 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- DNA ligase
- UniProt
- A0KHL9
- Pockets
- 7 · best druggability 0.74
Structure
1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase | protein | 668 | 40% helix, 22% strand | A0KHL9 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 590 | 0.74 | 0.81 | 64 | empty |
| 2 | 331 | 0.66 | 0.81 | 34 | empty |
| 3 | 63 | 0.63 | 0.92 | 20 | empty |
| 4 | 248 | 0.53 | 0.76 | 38 | empty |
| 5 | 206 | 0.51 | 0.77 | 26 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KHL9
- Elsewhere: UniProt A0KHL9 · AlphaFold DB A0KHL9
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