Research workbench
AlphaFold monomer V2.0 prediction for DNA ligase (B8GGB8)
Analyse AlphaFold monomer V2.0 prediction for DNA ligase (B8GGB8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B8GGB8
- Type
- protein
- Length
- 556 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0a518D7f85eD490B16cdD47CeC359Ccb050F802E
- Molecule
- DNA ligase
- UniProt
- B8GGB8
- Pockets
- 6 · best druggability 0.58
Structure
1 distinct chain · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA ligase | protein | 556 | 42% helix, 23% strand | B8GGB8 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.58 | 0.81 | 28 | empty |
| 2 | 110 | 0.54 | 0.83 | 26 | empty |
| 3 | 212 | 0.52 | 0.77 | 37 | empty |
| 4 | 96 | 0.39 | 0.76 | 16 | empty |
| 5 | 114 | 0.39 | 0.75 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8GGB8
- Elsewhere: UniProt B8GGB8 · AlphaFold DB B8GGB8
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