UniProt Q9RUB5
1-deoxy-D-xylulose-5-phosphate synthase (Q9RUB5)
1-deoxy-D-xylulose-5-phosphate synthase (UniProt Q9RUB5), EC 2.2.1.7: 5 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 1 pocket. Binding sites, druggability and experiment against prediction…
- UniProt
- Q9RUB5
- Protein
- 1-deoxy-D-xylulose-5-phosphate synthase
- EC
- 2.2.1.7
- Experimental structures
- 5
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 1 · 1 record with a druggable one
Structures
6 records of Q9RUB5 in the MolNFT archive: 5 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2O1X | 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans | x-ray diffraction | A, B, C, D | — | — |
| 2O1X | 1-deoxy-D-xylulose 5-phosphate synthase (dxs) from deinococcus radiodurans | x-ray diffraction | A, B, C, D | — | — |
| 6OUV | 1-deoxy-D-xylulose 5-phosphate synthase (dxps) from deinococcus radiodurans with… | x-ray diffraction | A, B | TDK, MG, NA | — |
| 6OUW | 1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with enamine… | x-ray diffraction | A | HTL, MG, NA | 1 (best 0.66) |
| 6OUW | 1-deoxy-D-xylulose 5-phosphate synthase (dxps) from deinococcus radiodurans with enamine… | x-ray diffraction | A | HTL, MG, NA | — |
| Q9RUB5 | AlphaFold monomer V2.0 prediction for 1-deoxy-D-xylulose-5-phosphate synthase (Q9RUB5) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 3 records
- NA · Sodium ion · in 3 records
- HTL · 2-acetyl-thiamine diphosphate · in 2 records
- TDK · 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-{(1S)-1-hydroxy-1-[(R)-hydroxy(methoxy)phosphoryl]ethyl}-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium · in 1 record
Experiment against prediction
- 6OUV chain B against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.68 Å
- 2O1X chain A against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.75 Å
- 2O1X chain A against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.75 Å
- 2O1X chain C against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.73 Å
- 2O1X chain C against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.73 Å
- 2O1X chain D against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.83 Å
- 2O1X chain D against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.83 Å
- 2O1X chain B against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.97 Å
- 2O1X chain B against the predicted model Q9RUB5: TM-score 0.99, RMSD 0.97 Å
- 6OUW chain A against the predicted model Q9RUB5: TM-score 0.98, RMSD 1.25 Å
Elsewhere
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