UniProt Q8NK89
Alpha-L-arabinofuranosidase B (Q8NK89)
Alpha-L-arabinofuranosidase B (UniProt Q8NK89), EC 3.2.1.55: 5 experimental structures and 1 predicted model on GenesisL1, 6 ligands bound, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q8NK89
- Protein
- Alpha-L-arabinofuranosidase B
- EC
- 3.2.1.55
- Experimental structures
- 5
- Predicted models
- 1
- Ligands
- 6
- Pockets
- 6 · 3 records with a druggable one
Structures
6 records of Q8NK89 in the MolNFT archive: 5 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6SXR | E221Q mutant of GH54 a-l-arabinofuranosidase soaked with 4-nitrophenyl a-l-arabinofuranoside | x-ray diffraction | A | NAG, SO4, KHP | 3 (best 0.64) |
| 6SXR | E221Q mutant of GH54 a-L-arabinofuranosidase soaked with 4-nitrophenyl a-L-arabinofuranoside | x-ray diffraction | A | NAG, SO4, KHP | — |
| 6SXS | GH54 a-l-arabinofuranosidase soaked with cyclic sulfate inhibitor | x-ray diffraction | AAA | NAG, SO4, LX5 | 1 (best 0.65) |
| 6SXT | GH54 a-l-arabinofuranosidase soaked with aziridine inhibitor | x-ray diffraction | A | NAG, ALA, SO4, LXE | 2 (best 0.64) |
| 6SXT | GH54 a-L-arabinofuranosidase soaked with aziridine inhibitor | x-ray diffraction | A | NAG, SO4, LXE | — |
| Q8NK89 | AlphaFold monomer V2.0 prediction for alpha-L-arabinofuranosidase B (Q8NK89) | predicted | A | — | — |
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 5 records
- SO4 · Sulfate ion · in 5 records
- KHP · 4-nitrophenyl alpha-L-arabinofuranoside · in 2 records
- LXE · [(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]azanium · in 2 records
- ALA · Alanine · in 1 record
- LX5 · [(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl] hydrogen sulfate · in 1 record
Experiment against prediction
- 6SXT chain A against the predicted model Q8NK89: TM-score 1.00, RMSD 0.24 Å
- 6SXT chain A against the predicted model Q8NK89: TM-score 1.00, RMSD 0.25 Å
- 6SXR chain A against the predicted model Q8NK89: TM-score 1.00, RMSD 0.27 Å
- 6SXR chain A against the predicted model Q8NK89: TM-score 1.00, RMSD 0.27 Å
- 6SXS chain AAA against the predicted model Q8NK89: TM-score 1.00, RMSD 0.27 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.