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Ligand · LX5

LX5 · [(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl] hydrogen sulfate

LX5, [(1~{S},2~{S},3~{S},4~{S})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl] hydrogen sulfate (C6 H12 O7 S, 228.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues…

Component
LX5
Formula
C6 H12 O7 S
Class
ligand
Structures
3
PDB entries
3

Binding sites

LX5 in 3 structures; the first of them:

  • 6SXS · GH54 a-l-arabinofuranosidase soaked with cyclic sulfate inhibitor · LX5 AAA510 · binds CYS176, CYS177, ASP179, GLU184, ASP189, MET195, TRP206, ASP219 and 7 more
  • 6SXU · GH51 a-l-arabinofuranosidase soaked with cyclic sulfate inhibitor · LX5 AAA601 · binds PHE27, GLU29, LEU31, ARG69, GLY73, ASN74, TRP99, ASN174 and 9 more
  • 6ZPZ · Structure of a-l-AraCS-Bound MgGH51 a-L-Arabinofuranosidase Crystal Type 1 · LX5 AAA711 · binds MET21, GLU23, ILE25, ARG226, GLY230, ASN231, TRP261, ASN350 and 7 more

Residues it binds most

GLU 4, TRP 4, ASN 4, GLY 4, LEU 3, ASP 1, ALA 3, ARG 3, ILE 3, TYR 3 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PEG · Di(hydroxyethyl)ether
  • BMA · beta-D-mannopyranose
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • IPA · Isopropyl alcohol
  • PGE · Triethylene glycol

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