UniProt Q86YD5
Low-density lipoprotein receptor class A domain-containing protein 3 (Q86YD5)
Low-density lipoprotein receptor class A domain-containing protein 3 (UniProt Q86YD5): 4 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 9 pockets. Binding sites, druggability and experiment against…
- UniProt
- Q86YD5
- Protein
- Low-density lipoprotein receptor class A domain-containing protein 3
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 9 · 3 records with a druggable one
Structures
5 records of Q86YD5 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7FFF | Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3 | electron microscopy | H, D, E, M | CA | 4 (best 0.84) |
| 7FFL | Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes | electron microscopy | D, E, H | CA | 3 (best 0.78) |
| 7FFN | Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes | electron microscopy | M | CA | 2 (best 0.55) |
| 7FFN | Cryo-EM structure of veev vlp-LDLRAD3-D1 complex at the 5-fold axes | electron microscopy | M | CA | — |
| Q86YD5 | AlphaFold monomer V2.0 prediction for low-density lipoprotein receptor class a domain-containing… | predicted | A | — | — |
Ligands
- CA · Calcium ion · in 4 records
Experiment against prediction
- 7FFF chain D against the predicted model Q86YD5: TM-score 0.78, RMSD 1.02 Å
- 7FFL chain D against the predicted model Q86YD5: TM-score 0.78, RMSD 1.02 Å
- 7FFL chain H against the predicted model Q86YD5: TM-score 0.78, RMSD 1.07 Å
- 7FFF chain H against the predicted model Q86YD5: TM-score 0.78, RMSD 1.07 Å
- 7FFF chain E against the predicted model Q86YD5: TM-score 0.77, RMSD 1.30 Å
- 7FFL chain E against the predicted model Q86YD5: TM-score 0.77, RMSD 1.30 Å
- 7FFF chain M against the predicted model Q86YD5: TM-score 0.77, RMSD 1.69 Å
- 7FFN chain M against the predicted model Q86YD5: TM-score 0.77, RMSD 1.69 Å
- 7FFN chain M against the predicted model Q86YD5: TM-score 0.77, RMSD 1.69 Å
Elsewhere
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