UniProt Q50306
50S ribosomal protein L5 (Q50306)
50S ribosomal protein L5 (UniProt Q50306): 38 experimental structures and 1 predicted model on GenesisL1, 17 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q50306
- Protein
- 50S ribosomal protein L5
- Experimental structures
- 38
- Predicted models
- 1
- Pockets
- 17 · 14 records with a druggable one
Structures
39 records of Q50306 in the MolNFT archive: 38 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7OOD | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | electron microscopy | d | — | 1 (best 0.81) |
| 7OOD | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol- treated cells | electron microscopy | d | — | — |
| 7P6Z | Mycoplasma pneumoniae 70S ribosome in untreated cells | electron microscopy | d | — | — |
| 7PAH | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAI | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAJ | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAK | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAL | 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAM | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.85) |
| 7PAN | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAO | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAQ | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAR | 70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAS | 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.85) |
| 7PAT | free 50S in untreated Mycoplasma pneumoniae cells | electron microscopy | d | — | 2 (best 0.84) |
| 7PAT | Free 50S in untreated mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PAU | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.84) |
| 7PAU | Free 50S in complex with ribosome recycling factor in untreated mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PH9 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PHA | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.86) |
| 7PHB | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PHC | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.86) |
| 7PI8 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.84) |
| 7PI9 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.84) |
| 7PIA | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PIB | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.83) |
| 7PIC | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PIO | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 2 (best 0.85) |
| 7PIP | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.89) |
| 7PIQ | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | — |
| 7PIR | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | d | — | 1 (best 0.83) |
| 7PIS | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae… | electron microscopy | d | — | 1 (best 0.85) |
| 7PIT | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae… | electron microscopy | d | — | — |
| 8P7X | Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cells | electron microscopy | d | — | — |
| 8P7Y | Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit | electron microscopy | d | — | — |
| 8P8B | Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells | electron microscopy | d | — | — |
| 8P8V | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S) | electron microscopy | d | — | — |
| 8P8W | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S) | electron microscopy | d | — | — |
| Q50306 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L5 (Q50306) | predicted | A | — | 1 (best 0.36) |
Experiment against prediction
- 8P8B chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.24 Å
- 8P7X chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.26 Å
- 8P8W chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.27 Å
- 8P8V chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.26 Å
- 7P6Z chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.28 Å
- 8P7Y chain d against the predicted model Q50306: TM-score 0.95, RMSD 1.30 Å
- 7OOD chain d against the predicted model Q50306: TM-score 0.94, RMSD 1.33 Å
- 7OOD chain d against the predicted model Q50306: TM-score 0.94, RMSD 1.33 Å
- 7PAM chain d against the predicted model Q50306: TM-score 0.94, RMSD 1.39 Å
- 7PAL chain d against the predicted model Q50306: TM-score 0.93, RMSD 1.44 Å
Elsewhere
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