UniProt Q48245
Vacuolating cytotoxin autotransporter (Q48245)
Vacuolating cytotoxin autotransporter (UniProt Q48245): 14 experimental structures and 1 predicted model on GenesisL1, 91 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q48245
- Protein
- Vacuolating cytotoxin autotransporter
- Experimental structures
- 14
- Predicted models
- 1
- Pockets
- 91 · 6 records with a druggable one
Structures
15 records of Q48245 in the MolNFT archive: 14 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2QV3 | Crystal Structure of the Helicobacter pylori Vacuolating Toxin p55 Domain | x-ray diffraction | A | — | 4 (best 0.53) |
| 2QV3 | Crystal structure of the helicobacter pylori vacuolating toxin P55 domain | x-ray diffraction | A | — | — |
| 6NYF | Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1) | electron microscopy | A, B, C, D, E, F | — | 20 (best 0.70) |
| 6NYF | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 1 (oa- 1) | electron microscopy | A, B, C, D, E, F | — | — |
| 6NYG | Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2a (OA-2a) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.70) |
| 6NYG | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 2A (oa-2A) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6NYJ | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 2B (oa-2B) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6NYL | Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2c (OA-2c) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.73) |
| 6NYL | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 2C (oa-2C) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6NYM | Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2d (OA-2d) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6NYM | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 2D (oa-2D) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6NYN | Helicobacter pylori vacuolating cytotoxin a oligomeric assembly 2E (oa-2E) | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 6ODY | Cryo-EM structure of Helicobacter pylori VacA hexamer | electron microscopy | A, B, C, D, E, F | — | 20 (best 0.86) |
| 6ODY | Cryo-EM structure of helicobacter pylori vaca hexamer | electron microscopy | A, B, C, D, E, F | — | — |
| Q48245 | AlphaFold monomer V2.0 prediction for vacuolating cytotoxin autotransporter (Q48245) | predicted | A | — | 7 (best 0.82) |
Experiment against prediction
- 6NYJ chain A against the predicted model Q48245: TM-score 0.98, RMSD 1.29 Å
- 6NYF chain A against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain A against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain F against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain E against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain C against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain D against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 6NYF chain B against the predicted model Q48245: TM-score 0.98, RMSD 1.42 Å
- 2QV3 chain A against the predicted model Q48245: TM-score 0.98, RMSD 1.16 Å
- 2QV3 chain A against the predicted model Q48245: TM-score 0.98, RMSD 1.16 Å
Elsewhere
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