UniProt Q3E757
60S ribosomal protein L11-B (Q3E757)
60S ribosomal protein L11-B (UniProt Q3E757): 60 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 26 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q3E757
- Protein
- 60S ribosomal protein L11-B
- Experimental structures
- 60
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 26 · 19 records with a druggable one
Structures
61 records of Q3E757 in the MolNFT archive: 60 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2NOQ | Structure of ribosome-bound cricket paralysis virus IRES RNA | electron microscopy | H | — | — |
| 2NOQ | Structure of ribosome-bound cricket paralysis virus ires RNA | electron microscopy | H | — | — |
| 4U3M | Crystal structure of Anisomycin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U3N | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U3U | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4N | Crystal structure of Edeine bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4O | Crystal structure of Geneticin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4Q | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4R | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4U | Crystal structure of Lycorine bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4Y | Crystal structure of Pactamycin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U4Z | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U50 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U51 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U52 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U53 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U55 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U56 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 4U6F | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | — | — |
| 5DGF | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA… | x-ray diffraction | M1, m1 | — | — |
| 5DGV | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA… | x-ray diffraction | M1, m1 | — | 2 (best 0.86) |
| 5I4L | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | OHX, MG | 2 (best 0.86) |
| 5LYB | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA… | x-ray diffraction | M1, m1 | MG, OHX | 1 (best 0.86) |
| 5MEI | Crystal structure of Agelastatin A bound to the 80S ribosome | x-ray diffraction | s, CM | OHX, MG | — |
| 5NDV | Crystal structure of Paromomycin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | MG | 2 (best 0.88) |
| 5NDW | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | x-ray diffraction | m1, M1 | — | 1 (best 0.88) |
| 5OBM | Crystal structure of Gentamicin bound to the yeast 80S ribosome | x-ray diffraction | M1, m1 | MG | — |
| 5TGA | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA… | x-ray diffraction | M1, m1 | OHX, MG | — |
| 5TGM | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA… | x-ray diffraction | M1, m1 | OHX, MG | 2 (best 0.87) |
| 6GQ1 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | electron microscopy | J | — | — |
| 6GQB | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | electron microscopy | J | — | — |
| 6GQV | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | electron microscopy | J | — | — |
| 6HHQ | Crystal structure of compound C45 bound to the yeast 80S ribosome | x-ray diffraction | s, CM | OHX, MG | — |
| 6I7O | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways… | electron microscopy | AG, XG | — | — |
| 6OIG | Subunit joining exposes nascent pre-40S rRNA for processing and quality control | electron microscopy | J | — | 1 (best 0.87) |
| 6Q8Y | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | electron microscopy | AG | — | — |
| 6R84 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) | electron microscopy | M | — | — |
| 6R86 | Yeast Vms1-60S ribosomal subunit complex (post-state) | electron microscopy | M | — | 1 (best 0.88) |
| 6R87 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | electron microscopy | M | — | — |
| 6S47 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | electron microscopy | AM | — | 1 (best 0.88) |
| 6T4Q | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | electron microscopy | LJ | — | — |
| 6T7T | Structure of yeast 80S ribosome stalled on poly(A) tract. | electron microscopy | LJ | — | — |
| 6TB3 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | electron microscopy | AG | — | 1 (best 0.88) |
| 6TNU | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | electron microscopy | AG | — | — |
| 6WOO | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | electron microscopy | J | — | 1 (best 0.88) |
| 7AZY | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | electron microscopy | h | — | 2 (best 0.87) |
| 7B7D | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | electron microscopy | LM | — | 1 (best 0.87) |
| 7NRC | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA… | electron microscopy | LM | — | — |
| 7NRD | Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and… | electron microscopy | LM | — | 2 (best 0.89) |
| 7ZS5 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | electron microscopy | BL | — | — |
| 7ZUX | Collided ribosome in a disome unit from S. cerevisiae | electron microscopy | EJ | — | — |
| 8BIP | Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex | electron microscopy | LJ | — | 1 (best 0.85) |
| 8BJQ | Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex | electron microscopy | LJ | — | 1 (best 0.86) |
| 8P9A | 80S yeast ribosome in complex with Methyllissoclimide | x-ray diffraction | s, CM | OHX, MG | — |
| 8XU8 | State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation | electron microscopy | M | — | — |
| 8Y0U | dormant ribosome with STM1 | electron microscopy | LJ | — | 2 (best 0.86) |
| 8YLD | State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation | electron microscopy | M | — | — |
| 8YLR | State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation | electron microscopy | M | — | — |
| 8Z70 | State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding | electron microscopy | M | — | 1 (best 0.88) |
| 8Z71 | State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding | electron microscopy | M | — | 1 (best 0.86) |
1 record more on the page itself.
Ligands
Experiment against prediction
- 4U4R chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.70 Å
- 5DGV chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.69 Å
- 4U3U chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.73 Å
- 6TB3 chain AG against the predicted model Q3E757: TM-score 0.98, RMSD 0.72 Å
- 4U56 chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.72 Å
- 4U3M chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.73 Å
- 4U51 chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.71 Å
- 4U50 chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.73 Å
- 4U4Q chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.73 Å
- 4U3N chain M1 against the predicted model Q3E757: TM-score 0.98, RMSD 0.72 Å
Elsewhere
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