UniProt Q06506
Ribosomal RNA-processing protein 9 (Q06506)
Ribosomal RNA-processing protein 9 (UniProt Q06506): 28 experimental structures and 1 predicted model on GenesisL1, 17 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q06506
- Protein
- Ribosomal RNA-processing protein 9
- Experimental structures
- 28
- Predicted models
- 1
- Pockets
- 17 · 9 records with a druggable one
Structures
29 records of Q06506 in the MolNFT archive: 28 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4J0X | Structure of Rrp9 | x-ray diffraction | A, B | — | — |
| 4J0X | Structure of RRP9 | x-ray diffraction | A, B | — | — |
| 5TZS | Architecture of the yeast small subunit processome | electron microscopy | g | — | 1 (best 0.81) |
| 5TZS | Architecture of the yeast small subunit processome | electron microscopy | g | — | — |
| 5WLC | The complete structure of the small subunit processome | electron microscopy | SG | — | — |
| 5WYJ | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | electron microscopy | 3F | — | — |
| 5WYK | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | electron microscopy | 3F | — | — |
| 6KE6 | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | electron microscopy | 3F | — | 1 (best 0.86) |
| 6LQP | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) | electron microscopy | 3F | — | — |
| 6LQQ | Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) | electron microscopy | 3F | — | — |
| 6LQR | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) | electron microscopy | 3F | — | — |
| 6LQS | Cryo-EM structure of 90S small subunit preribosomes in transition states (State D) | electron microscopy | 3F | — | — |
| 6LQT | Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) | electron microscopy | 3F | — | — |
| 6LQU | Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) | electron microscopy | 3F | — | — |
| 6LQV | Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) | electron microscopy | 3F | — | — |
| 6ND4 | Conformational switches control early maturation of the eukaryotic small ribosomal subunit | electron microscopy | g | — | — |
| 6ND4 | Conformational switches control early maturation of the eukaryotic small ribosomal subunit | electron microscopy | g | — | — |
| 6ZQA | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala) | electron microscopy | CH | — | — |
| 6ZQB | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2 | electron microscopy | CH | — | 2 (best 0.85) |
| 6ZQC | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1 | electron microscopy | CH | — | — |
| 6ZQD | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 | electron microscopy | CH | — | — |
| 6ZQE | Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) | electron microscopy | CH | — | — |
| 7AJT | Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome) | electron microscopy | CH | — | 1 (best 0.86) |
| 7AJU | Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) | electron microscopy | CH | — | 1 (best 0.86) |
| 7D4I | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1… | electron microscopy | 3F | — | 3 (best 0.88) |
| 7D5S | Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) | electron microscopy | 3F | — | — |
| 7D5T | Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) | electron microscopy | 3F | — | 1 (best 0.84) |
| 7D63 | Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) | electron microscopy | 3F | — | 2 (best 0.86) |
| Q06506 | AlphaFold monomer V2.0 prediction for ribosomal RNA-processing protein 9 (Q06506) | predicted | A | — | 5 (best 0.85) |
Experiment against prediction
- 4J0X chain A against the predicted model Q06506: TM-score 0.99, RMSD 0.84 Å
- 4J0X chain A against the predicted model Q06506: TM-score 0.99, RMSD 0.84 Å
- 4J0X chain B against the predicted model Q06506: TM-score 0.99, RMSD 0.92 Å
- 4J0X chain B against the predicted model Q06506: TM-score 0.99, RMSD 0.92 Å
- 5WYJ chain 3F against the predicted model Q06506: TM-score 0.98, RMSD 1.00 Å
- 5WYK chain 3F against the predicted model Q06506: TM-score 0.98, RMSD 1.03 Å
- 5TZS chain g against the predicted model Q06506: TM-score 0.98, RMSD 1.13 Å
- 5TZS chain g against the predicted model Q06506: TM-score 0.98, RMSD 1.13 Å
- 7D5S chain 3F against the predicted model Q06506: TM-score 0.97, RMSD 1.35 Å
- 6ND4 chain g against the predicted model Q06506: TM-score 0.97, RMSD 1.44 Å
Elsewhere
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