UniProt P98172
Ephrin-B1 (P98172)
Ephrin-B1 (UniProt P98172): 2 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 18 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P98172
- Protein
- Ephrin-B1
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 18 · 1 record with a druggable one
Structures
3 records of P98172 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6THG | Cedar Virus attachment glycoprotein (G) in complex with human ephrin-B1 | x-ray diffraction | D, C, F, H, J | NAG | 18 (best 0.86) |
| 6THG | Cedar virus attachment glycoprotein (G) in complex with human ephrin- B1 | x-ray diffraction | D, C, F, H, J | NAG | — |
| P98172 | AlphaFold monomer V2.0 prediction for ephrin-B1 (P98172) | predicted | A | — | — |
Ligands
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 2 records
Experiment against prediction
- 6THG chain H against the predicted model P98172: TM-score 0.93, RMSD 1.37 Å
- 6THG chain H against the predicted model P98172: TM-score 0.93, RMSD 1.37 Å
- 6THG chain C against the predicted model P98172: TM-score 0.93, RMSD 1.39 Å
- 6THG chain C against the predicted model P98172: TM-score 0.93, RMSD 1.39 Å
- 6THG chain D against the predicted model P98172: TM-score 0.93, RMSD 1.41 Å
- 6THG chain D against the predicted model P98172: TM-score 0.93, RMSD 1.41 Å
- 6THG chain F against the predicted model P98172: TM-score 0.93, RMSD 1.44 Å
- 6THG chain F against the predicted model P98172: TM-score 0.93, RMSD 1.44 Å
- 6THG chain J against the predicted model P98172: TM-score 0.92, RMSD 1.47 Å
- 6THG chain J against the predicted model P98172: TM-score 0.92, RMSD 1.47 Å
Elsewhere
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