UniProt P68826
P68826
P68826 (UniProt P68826): 15 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P68826
- Experimental structures
- 15
- Predicted models
- 1
- Ligands
- 5
Structures
16 records of P68826 in the MolNFT archive: 15 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1LM4 | Structure of Peptide Deformylase from Staphylococcus aureus at 1.45 A | x-ray diffraction | A, B | — | — |
| 1LM4 | Structure of peptide deformylase from staphylococcus aureus at 1.45 a | x-ray diffraction | A, B | — | — |
| 1LQW | Crystal Structure of S.aureus Peptide Deformylase | x-ray diffraction | A, B | — | — |
| 1LQW | Crystal structure of S.AUREUS peptide deformylase | x-ray diffraction | A, B | — | — |
| 1Q1Y | Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin | x-ray diffraction | A | — | — |
| 1Q1Y | Crystal structures of peptide deformylase from staphylococcus aureus complexed with actinonin | x-ray diffraction | A | — | — |
| 2AI9 | S.aureus Polypeptide Deformylase | x-ray diffraction | A, B | — | — |
| 2AI9 | S.AUREUS polypeptide deformylase | x-ray diffraction | A, B | — | — |
| 6JFG | K1U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI, K1U | — |
| 6JFG | K1U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI, K1U | — |
| 6JFO | Formyl-met-ala-ser bound crystal structure of class II peptide deformylase from methicillin… | x-ray diffraction | A | MG | — |
| 6JFQ | K2U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI, K2U | — |
| 6JFR | K3U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI, K3U | — |
| 6JFR | K3U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI, K3U | — |
| 6JFS | K4U bound crystal structure of class II peptide deformylase from methicillin resistant… | x-ray diffraction | A | NI | — |
| P68826 | AlphaFold monomer V2.0 prediction for peptide deformylase (P68826) | predicted | A | — | — |
Ligands
- NI · Nickel (II) ion · in 6 records
- K1U · (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl) sulfanyl]butanoic acid · in 2 records
- K3U · S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate · in 2 records
- K2U · (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid · in 1 record
- MG · Magnesium ion · in 1 record
Experiment against prediction
- 6JFS chain A against the predicted model P68826: TM-score 0.98, RMSD 0.66 Å
- 6JFQ chain A against the predicted model P68826: TM-score 0.99, RMSD 0.67 Å
- 6JFG chain A against the predicted model P68826: TM-score 0.99, RMSD 0.67 Å
- 6JFG chain A against the predicted model P68826: TM-score 0.99, RMSD 0.67 Å
- 6JFO chain A against the predicted model P68826: TM-score 0.99, RMSD 0.68 Å
- 1LQW chain B against the predicted model P68826: TM-score 0.99, RMSD 0.62 Å
- 1LQW chain B against the predicted model P68826: TM-score 0.99, RMSD 0.62 Å
- 6JFR chain A against the predicted model P68826: TM-score 0.99, RMSD 0.69 Å
- 6JFR chain A against the predicted model P68826: TM-score 0.99, RMSD 0.69 Å
- 1Q1Y chain A against the predicted model P68826: TM-score 0.97, RMSD 0.68 Å
Elsewhere
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