UniProt P55788
Thanatin (P55788)
Thanatin (UniProt P55788): 29 experimental structures and 1 predicted model on GenesisL1, 5 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P55788
- Protein
- Thanatin
- Experimental structures
- 29
- Predicted models
- 1
- Pockets
- 5 · 4 records with a druggable one
Structures
30 records of P55788 in the MolNFT archive: 29 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5XO3 | Thanatin M21F Free | solution nmr | A | — | — |
| 5XO3 | Thanatin M21F free | solution nmr | A | — | — |
| 5XO4 | Free Thanatin at 298K | solution nmr | A | — | — |
| 5XO4 | Free thanatin at 298K | solution nmr | A | — | — |
| 5XO5 | Free Thanatin Y10A M21A | solution nmr | A | — | — |
| 5XO5 | Free thanatin Y10A M21A | solution nmr | A | — | — |
| 5XO9 | Thanatin in presence of LPS | solution nmr | A, B | — | — |
| 5XO9 | Thanatin in presence of lps | solution nmr | A, B | — | — |
| 5XOA | Thanatin M21F in complex with LPS | solution nmr | A, B | — | — |
| 5XOA | Thanatin M21F in complex with lps | solution nmr | A, B | — | — |
| 5XOK | Thanatin Y10M21AA in complex with LPS | solution nmr | A, B | — | — |
| 5XOK | Thanatin Y10M21AA in complex with lps | solution nmr | A, B | — | — |
| 5XOL | Thanatin R13R14AA in complex with LPS | solution nmr | A, B | — | — |
| 5XOL | Thanatin R13R14AA in complex with lps | solution nmr | A, B | — | — |
| 6AAB | Thanatin in presence of DPC | solution nmr | A | — | — |
| 6AAB | Thanatin in presence of dpc | solution nmr | A | — | — |
| 6AFQ | Thanatin M21F in presence of DPC | solution nmr | A | — | — |
| 6AFQ | Thanatin M21F in presence of dpc | solution nmr | A | — | — |
| 6GD5 | The solution structure of the LptA-Thanatin complex | solution nmr | B | — | — |
| 6GD5 | The solution structure of the lpta-thanatin complex | solution nmr | B | — | — |
| 7QS6 | Solution structure of thanatin-like derivative 7 in complex with E.coli LptA | solution nmr | B | — | 2 (best 0.65) |
| 7ZAX | Solution structure of thanatin-like derivative 7 in complex with K. pneumoniae LptA | solution nmr | B | — | 1 (best 0.51) |
| 7ZED | Solution structure of thanatin-like derivative 7 in complex with E.coli LptA mutant Q62L | solution nmr | B | — | 1 (best 0.60) |
| 8BSS | Solution Structure of thanatin-like derivative 5 in complex with E. coli LptA mutant Q62L | solution nmr | B | — | — |
| 8GAJ | Crystal Structure of E. coli LptA in complex with Podisus maculiventris Thanatin | x-ray diffraction | B, D | — | — |
| 8ONU | Solution structure of thanatin analogue 7 in complex with LptAm(Ab)1.0 | solution nmr | B | — | 1 (best 0.60) |
| 8TFV | Insect defense peptide | solution nmr | A | — | — |
| 8TFV | Insect defense peptide | solution nmr | A | — | — |
| 8XTH | Thanatin PM15Y in LPS | solution nmr | A | — | — |
| P55788 | AlphaFold monomer V2.0 prediction for thanatin (P55788) | predicted | A | — | — |
Experiment against prediction
- 8BSS chain B against the predicted model P55788: TM-score 0.46, RMSD 1.00 Å
- 8GAJ chain B against the predicted model P55788: TM-score 0.43, RMSD 1.14 Å
- 6GD5 chain B against the predicted model P55788: TM-score 0.43, RMSD 1.48 Å
- 6GD5 chain B against the predicted model P55788: TM-score 0.43, RMSD 1.48 Å
- 7ZAX chain B against the predicted model P55788: TM-score 0.41, RMSD 0.80 Å
- 5XO9 chain A against the predicted model P55788: TM-score 0.39, RMSD 1.71 Å
- 5XO9 chain A against the predicted model P55788: TM-score 0.39, RMSD 1.71 Å
- 7QS6 chain B against the predicted model P55788: TM-score 0.36, RMSD 0.87 Å
- 8ONU chain B against the predicted model P55788: TM-score 0.35, RMSD 0.96 Å
- 8TFV chain A against the predicted model P55788: TM-score 0.33, RMSD 1.40 Å
Elsewhere
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