UniProt P53634
Dipeptidyl peptidase 1 (P53634)
Dipeptidyl peptidase 1 (UniProt P53634), EC 3.4.14.1: 31 experimental structures and 1 predicted model on GenesisL1, 10 ligands bound, 8 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P53634
- Protein
- Dipeptidyl peptidase 1
- EC
- 3.4.14.1
- Experimental structures
- 31
- Predicted models
- 1
- Ligands
- 10
- Pockets
- 8 · 1 record with a druggable one
Structures
32 records of P53634 in the MolNFT archive: 31 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1K3B | Crystal Structure of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added to an… | x-ray diffraction | A, B, C | — | — |
| 1K3B | Crystal structure of human dipeptidyl peptidase I (cathepsin C): exclusion domain added to an… | x-ray diffraction | A, B, C | — | — |
| 2DJF | Crystal Structure of human dipeptidyl peptidase I (Cathepsin C) in complex with the inhibitor… | x-ray diffraction | A, B, C | — | — |
| 2DJF | Crystal structure of human dipeptidyl peptidase I (cathepsin C) in complex with the inhibitor… | x-ray diffraction | A, B, C | — | — |
| 2DJG | Re-determination of the native structure of human dipeptidyl peptidase I (cathepsin C) | x-ray diffraction | A, B, C | — | — |
| 2DJG | Re-determination of the native structure of human dipeptidyl peptidase I (cathepsin C) | x-ray diffraction | A, B, C | — | — |
| 3PDF | Discovery of Novel Cyanamide-Based Inhibitors of Cathepsin C | x-ray diffraction | A | — | — |
| 3PDF | Discovery of novel cyanamide-based inhibitors of cathepsin C | x-ray diffraction | A | — | — |
| 4CDC | Human DPP1 in complex with (2S)-2-amino-N-((1S)-1-cyano-2-(4- phenylphenyl)ethyl)butanamide | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 4CDC | Human DPP1 in complex with (2S)-2-amino-N-((1S)-1-cyano-2-(4- PHENYLPHENYL)ETHYL)BUTANAMIDE | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | — |
| 4CDD | Human DPP1 in complex with (2S)-N-((1S)-1-cyano-2-(4-(4-cyanophenyl)… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4CDD | Human DPP1 in complex with (2S)-N-((1S)-1-cyano-2-(4-(4-cyanophenyl)… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4CDE | Human DPP1 in complex with 4-amino-N-((1S)-1-cyano-2-(4-(4… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4CDE | Human DPP1 in complex with 4-amino-N-((1S)-1-cyano-2-(4-(4… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4CDF | Human DPP1 in complex with (2S,4S)-N-((1S)-1-cyano-2-(4-(4… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4CDF | Human DPP1 in complex with (2S,4S)-N-((1S)-1-cyano-2-(4-(4… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 4OEL | Crystal structure of Cathepsin C in complex with dipeptide substrates | x-ray diffraction | A, B | — | — |
| 4OEL | Crystal structure of cathepsin C in complex with dipeptide substrates | x-ray diffraction | A, B | — | — |
| 4OEM | Crystal structure of Cathepsin C in complex with dipeptide substrates | x-ray diffraction | A, B | — | — |
| 4OEM | Crystal structure of cathepsin C in complex with dipeptide substrates | x-ray diffraction | A, B | — | — |
| 6IC5 | Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 2 | x-ray diffraction | A, B, C | NAG, CL, HB5 | — |
| 6IC6 | Human cathepsin-C in complex with cyclopropyl peptidyl nitrile inhibitor 1 | x-ray diffraction | A, B, C | NAG, CL, H9B | 4 (best 0.47) |
| 6IC6 | Human cathepsin-C in complex with cyclopropyl peptidyl nitrile inhibitor 1 | x-ray diffraction | A, B, C | NAG, CL, H9B | — |
| 6IC7 | Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 3 | x-ray diffraction | A, B, C | NAG, CL, H9H | 4 (best 0.51) |
| 6IC7 | Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 3 | x-ray diffraction | A, B, C | NAG, CL, H9H | — |
| 6RN6 | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C, D, E, F | NAG, CL, K9Q | — |
| 6RN7 | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C | NAG, K9W, CL | — |
| 6RN9 | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C | NAG, K9Z, CL | — |
| 6RNE | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C | NAG, KA8, CL | — |
| 6RNI | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C | NAG, CL, KAQ | — |
| 6RNI | DPP1 in complex with inhibitor | x-ray diffraction | A, B, C | NAG, CL, KAQ | — |
| P53634 | AlphaFold monomer V2.0 prediction for dipeptidyl peptidase 1 (P53634) | predicted | A | — | — |
Ligands
- CL · Chloride ion · in 11 records
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 11 records
- H9B · (2~{S})-~{N}-[(1~{R},2~{R})-1-(aminomethyl)-2-[4-[4-(trifluoromethyl)phenyl]phenyl]cyclopropyl]-2-azanyl-butanamide · in 2 records
- H9H · 1-azanyl-~{N}-[(1~{R},2~{R})-1-cyano-2-[4-[4-(4-methylpiperazin-1-yl) sulfonylphenyl]phenyl]cyclopropyl]cyclohexane-1-carboxamide · in 2 records
- KAQ · (2~{S},4~{S})-~{N}-[(2~{S})-1-azanyl-3-[4-(4-cyanophenyl)phenyl]propan-2-yl]-4-methylsulfanyl-pyrrolidine-2-carboxamide · in 2 records
- HB5 · (2~{S})-2-azanyl-~{N}-[(1~{R},2~{R})-1-(iminomethyl)-2-[4-[4-(4-methylpiperazin-1-yl) sulfonylphenyl]phenyl]cyclopropyl]-3-thiophen-2-yl-propanamide · in 1 record
- K9Q · (2~{S},4~{R})-~{N}-[(2~{S})-1-azanyl-3-(4-phenylphenyl)propan-2-yl]-4-oxidanyl-pyrrolidine-2-carboxamide · in 1 record
- K9W · (2~{S})-~{N}-[(2~{S})-1-azanyl-3-[4-(4-cyanophenyl) phenyl]propan-2-yl]pyrrolidine-2-carboxamide · in 1 record
- K9Z · (2~{S},4~{S})-~{N}-[(2~{S})-1-azanyl-3-[4-(4-cyanophenyl)phenyl]propan-2-yl]-4-oxidanyl-pyrrolidine-2-carboxamide · in 1 record
- KA8 · (2~{S},4~{S})-~{N}-[(2~{S})-1-azanyl-3-[4-(4-cyanophenyl)phenyl]propan-2-yl]-4-fluoranyl-pyrrolidine-2-carboxamide · in 1 record
Experiment against prediction
- 2DJG chain B against the predicted model P53634: TM-score 1.00, RMSD 0.22 Å
- 2DJG chain B against the predicted model P53634: TM-score 1.00, RMSD 0.22 Å
- 4CDE chain B against the predicted model P53634: TM-score 1.00, RMSD 0.23 Å
- 4CDE chain B against the predicted model P53634: TM-score 1.00, RMSD 0.23 Å
- 4CDD chain B against the predicted model P53634: TM-score 1.00, RMSD 0.25 Å
- 4CDD chain B against the predicted model P53634: TM-score 1.00, RMSD 0.25 Å
- 4CDC chain H against the predicted model P53634: TM-score 1.00, RMSD 0.26 Å
- 4CDC chain H against the predicted model P53634: TM-score 1.00, RMSD 0.26 Å
- 6IC7 chain B against the predicted model P53634: TM-score 1.00, RMSD 0.27 Å
- 6IC7 chain B against the predicted model P53634: TM-score 1.00, RMSD 0.27 Å
Elsewhere
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