UniProt P40007
Nucleolar protein 16 (P40007)
Nucleolar protein 16 (UniProt P40007): 24 experimental structures and 1 predicted model on GenesisL1, 52 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P40007
- Protein
- Nucleolar protein 16
- Experimental structures
- 24
- Predicted models
- 1
- Pockets
- 52 · 16 records with a druggable one
Structures
25 records of P40007 in the MolNFT archive: 24 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6C0F | Yeast nucleolar pre-60S ribosomal subunit (state 2) | electron microscopy | 7 | — | — |
| 6C0F | Yeast nucleolar pre-60S ribosomal subunit (state 2) | electron microscopy | 7 | — | — |
| 6CB1 | Yeast nucleolar pre-60S ribosomal subunit (state 3) | electron microscopy | 7 | — | 2 (best 0.85) |
| 6CB1 | Yeast nucleolar pre-60S ribosomal subunit (state 3) | electron microscopy | 7 | — | — |
| 6ELZ | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | electron microscopy | v | — | 4 (best 0.88) |
| 6EM1 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | electron microscopy | v | — | 4 (best 0.87) |
| 6EM3 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | 2 (best 0.78) |
| 6EM3 | State a architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | — |
| 6EM4 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | 2 (best 0.71) |
| 6EM4 | State B architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | — |
| 6EM5 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | — |
| 6EM5 | State D architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | v | — | — |
| 7NAC | State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model | electron microscopy | v | — | — |
| 7OHP | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut… | electron microscopy | v | — | 4 (best 0.85) |
| 7OHR | Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae | electron microscopy | v | — | 2 (best 0.86) |
| 7OHS | Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae | electron microscopy | v | — | 3 (best 0.88) |
| 7OHV | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut… | electron microscopy | v | — | 3 (best 0.86) |
| 7OHW | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut… | electron microscopy | v | — | 3 (best 0.85) |
| 7OHX | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut… | electron microscopy | v | — | 5 (best 0.88) |
| 7R6Q | State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model | electron microscopy | v | — | 2 (best 0.87) |
| 7R7A | State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model | electron microscopy | v | — | 3 (best 0.88) |
| 8V83 | 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map) | electron microscopy | v | — | 5 (best 0.87) |
| 8V84 | 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map) | electron microscopy | v | — | 3 (best 0.89) |
| 8V87 | 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) | electron microscopy | v | — | 3 (best 0.89) |
| P40007 | AlphaFold monomer V2.0 prediction for nucleolar protein 16 (P40007) | predicted | A | — | 2 (best 0.32) |
Experiment against prediction
- 7R6Q chain v against the predicted model P40007: TM-score 0.96, RMSD 0.48 Å
- 7OHP chain v against the predicted model P40007: TM-score 0.58, RMSD 3.35 Å
- 6EM3 chain v against the predicted model P40007: TM-score 0.56, RMSD 3.41 Å
- 6EM3 chain v against the predicted model P40007: TM-score 0.56, RMSD 3.41 Å
- 6EM4 chain v against the predicted model P40007: TM-score 0.56, RMSD 3.41 Å
- 6EM4 chain v against the predicted model P40007: TM-score 0.56, RMSD 3.41 Å
- 6EM1 chain v against the predicted model P40007: TM-score 0.56, RMSD 3.44 Å
- 7OHR chain v against the predicted model P40007: TM-score 0.56, RMSD 3.40 Å
- 8V87 chain v against the predicted model P40007: TM-score 0.55, RMSD 3.39 Å
- 6ELZ chain v against the predicted model P40007: TM-score 0.55, RMSD 3.38 Å
Elsewhere
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