UniProt P38805
Ribosome production factor 1 (P38805)
Ribosome production factor 1 (UniProt P38805): 16 experimental structures and 1 predicted model on GenesisL1, 41 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P38805
- Protein
- Ribosome production factor 1
- Experimental structures
- 16
- Predicted models
- 1
- Pockets
- 41 · 12 records with a druggable one
Structures
17 records of P38805 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5Z3G | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | electron microscopy | O | — | 2 (best 0.85) |
| 5Z3G | Cryo-EM structure of a nucleolar pre-60S ribosome (RPF1-tap) | electron microscopy | O | — | 2 (best 0.85) |
| 6C0F | Yeast nucleolar pre-60S ribosomal subunit (state 2) | electron microscopy | I | — | 3 (best 0.87) |
| 6C0F | Yeast nucleolar pre-60S ribosomal subunit (state 2) | electron microscopy | I | — | 3 (best 0.87) |
| 6EM1 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | electron microscopy | x | — | 2 (best 0.86) |
| 6EM3 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | 1 (best 0.64) |
| 6EM3 | State a architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | 1 (best 0.64) |
| 6EM4 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | — |
| 6EM4 | State B architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | — |
| 6EM5 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | — |
| 6EM5 | State D architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of nucleolar… | electron microscopy | x | — | — |
| 7OHS | Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae | electron microscopy | x | — | 6 (best 0.84) |
| 7OHW | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut… | electron microscopy | x | — | 4 (best 0.87) |
| 7OHX | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut… | electron microscopy | x | — | 6 (best 0.85) |
| 8V83 | 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map) | electron microscopy | x | — | 3 (best 0.87) |
| 8V84 | 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map) | electron microscopy | x | — | 3 (best 0.86) |
| P38805 | AlphaFold monomer V2.0 prediction for ribosome production factor 1 (P38805) | predicted | A | — | 5 (best 0.38) |
Experiment against prediction
- 5Z3G chain O against the predicted model P38805: TM-score 0.95, RMSD 1.26 Å
- 5Z3G chain O against the predicted model P38805: TM-score 0.95, RMSD 1.26 Å
- 8V84 chain x against the predicted model P38805: TM-score 0.93, RMSD 1.91 Å
- 8V83 chain x against the predicted model P38805: TM-score 0.93, RMSD 1.93 Å
- 6C0F chain I against the predicted model P38805: TM-score 0.93, RMSD 1.98 Å
- 6C0F chain I against the predicted model P38805: TM-score 0.93, RMSD 1.98 Å
- 6EM1 chain x against the predicted model P38805: TM-score 0.92, RMSD 1.95 Å
- 7OHW chain x against the predicted model P38805: TM-score 0.92, RMSD 1.96 Å
- 7OHX chain x against the predicted model P38805: TM-score 0.92, RMSD 1.97 Å
- 6EM5 chain x against the predicted model P38805: TM-score 0.92, RMSD 1.98 Å
Elsewhere
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