UniProt P16013
Cytochrome f (P16013)
Cytochrome f (UniProt P16013): 4 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 33 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P16013
- Protein
- Cytochrome f
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 33 · 3 records with a druggable one
Structures
5 records of P16013 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6RQF | 3.6 ångström cryo-EM structure of the dimeric cytochrome B6F complex from spinacia oleracea with… | electron microscopy | K, C | HEC, PGV, SQD | — |
| 7QRM | Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with… | electron microscopy | C, K | UMQ, HEC, SQD, PL9 | 10 (best 0.89) |
| 7ZYV | Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with… | electron microscopy | C, K | UMQ, PL9, HEC, SQD | 11 (best 0.88) |
| 9ES9 | Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at… | electron microscopy | C, K | UMQ, HEC, SQD | 12 (best 0.87) |
| P16013 | AlphaFold monomer V2.0 prediction for cytochrome F (P16013) | predicted | A | — | — |
Ligands
- HEC · Heme C · in 4 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 4 records
- UMQ · Undecyl-maltoside · in 3 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 2 records
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 1 record
Experiment against prediction
- 6RQF chain K against the predicted model P16013: TM-score 0.98, RMSD 0.86 Å
- 6RQF chain C against the predicted model P16013: TM-score 0.98, RMSD 0.99 Å
- 7QRM chain C against the predicted model P16013: TM-score 0.96, RMSD 1.29 Å
- 7QRM chain K against the predicted model P16013: TM-score 0.96, RMSD 1.29 Å
- 7ZYV chain C against the predicted model P16013: TM-score 0.96, RMSD 1.32 Å
- 7ZYV chain K against the predicted model P16013: TM-score 0.96, RMSD 1.33 Å
- 9ES9 chain C against the predicted model P16013: TM-score 0.96, RMSD 1.33 Å
- 9ES9 chain K against the predicted model P16013: TM-score 0.96, RMSD 1.33 Å
Elsewhere
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