UniProt P12312

Photosystem II reaction center protein M (P12312)

Photosystem II reaction center protein M (UniProt P12312): 43 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 26 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…

UniProt: P12312
Protein: Photosystem II reaction center protein M
Experimental structures: 43
Predicted models: 1
Ligands: 9
Pockets: 26 · 20 records with a druggable one

Structures

44 records of P12312 in the MolNFT archive: 43 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
3WU2	Crystal structure analysis of Photosystem II complex	x-ray diffraction	M, m	—	—
3WU2	Crystal structure analysis of photosystem II complex	x-ray diffraction	M, m	—	—
5B5E	Crystal structure analysis of photosystem II complex	x-ray diffraction	M, m	—	—
5B66	Crystal structure analysis of photosystem II complex	x-ray diffraction	M, m	—	—
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	M, m	CLA, BCR, LMG, LHG, SQD, BCT	2 (best 0.82)
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	M, m	CLA, BCR, LMG, LHG, SQD, BCT	—
6JLJ	Xfel structure of cyanobacterial photosystem II (dark state, DATASET1)	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
6JLK	Xfel structure of cyanobacterial photosystem II (1F state, DATASET1)	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	—
6JLL	XFEL structure of cyanobacterial photosystem II (2F state, dataset1)	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	2 (best 0.83)
6JLL	Xfel structure of cyanobacterial photosystem II (2F state, DATASET1)	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	—
6JLM	XFEL structure of cyanobacterial photosystem II (dark state, dataset2)	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	2 (best 0.83)
6JLM	Xfel structure of cyanobacterial photosystem II (dark state, DATASET2)	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	—
6JLN	Xfel structure of cyanobacterial photosystem II (1F state, DATASET2)	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
6JLO	Xfel structure of cyanobacterial photosystem II (2F state, DATASET2)	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
6JLP	XFEL structure of cyanobacterial photosystem II (3F state, dataset2)	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	2 (best 0.83)
6JLP	Xfel structure of cyanobacterial photosystem II (3F state, DATASET2)	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
7CJI	Photosystem II structure in the S1 state	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.83)
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	M, m	CLA, BCR, SQD, LHG, LMG, UNL	—
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.82)
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	—
7CZL	Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium…	electron microscopy	M, m	MGE, CLA, BCR, SQD	—
7D1T	Cryo-EM Structure of PSII at 1.95 angstrom resolution	electron microscopy	M, m	CLA, BCR, SQD, LMG, LHG, UNL	—
7D1T	Cryo-EM structure of psii at 1.95 ångström resolution	electron microscopy	M, m	CLA, BCR, SQD, LMG, LHG, UNL	—
7D1U	Cryo-EM structure of psii at 2.08 ångström resolution	electron microscopy	M, m	CLA, BCR, LMG, LHG, SQD, UNL	—
7DXA	PSII intermediate Psb28-RC47	electron microscopy	m	CLA, BCR, MGE, SQD	2 (best 0.84)
7DXA	Psii intermediate PSB28-RC47	electron microscopy	m	CLA, BCR, MGE, SQD	—
7DXH	Cryo-EM structure of PSII intermediate Psb28-PSII complex	electron microscopy	m	MGE, CLA, BCR, SQD	—
7DXH	Cryo-EM structure of psii intermediate PSB28-psii complex	electron microscopy	m	MGE, CLA, BCR, SQD	—
7EDA	Structure of monomeric photosystem II	electron microscopy	M	CLA, BCR, LMG, LHG	—
8GN1	Crystal structure of DBBQ-bound photosystem II complex	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	2 (best 0.83)
8GN2	Crystal structure of PPBQ-bound photosystem II complex	x-ray diffraction	M, m	CLA, BCR, LMG, UNL, LHG, SQD	1 (best 0.83)
8IR5	XFEL structure of cyanobacterial photosystem II under dark conditions	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.79)
8IR7	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.81)
8IR8	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.81)
8IR9	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay	x-ray diffraction	M, m	LHG, CLA, BCR, LMG, SQD, UNL	1 (best 0.79)
8IRA	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond…	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.81)
8IRB	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.79)
8IRC	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay…	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	1 (best 0.78)
8IRD	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond…	x-ray diffraction	M, m	LHG, CLA, BCR, LMG, SQD, UNL	1 (best 0.81)
8IRE	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond…	x-ray diffraction	M, m	CLA, BCR, SQD, LMG, LHG, UNL	1 (best 0.82)
8IRF	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond…	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.81)
8IRI	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond…	x-ray diffraction	M, m	LHG, CLA, BCR, SQD, LMG, UNL	1 (best 0.78)
P12312	AlphaFold monomer V2.0 prediction for photosystem II reaction center protein M (P12312)	predicted	A	—	—

Ligands

BCR · Beta-carotene · in 39 records
CLA · Chlorophyll A · in 39 records
SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 38 records
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 34 records
LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 34 records
UNL · Unknown ligand · in 31 records
MGE · (1S)-2-(alpha-L-allopyranosyloxy)-1-[(tridecanoyloxy) methyl]ethyl palmitate · in 5 records
BCT · Bicarbonate ion · in 2 records
CA · Calcium ion · in 1 record

Experiment against prediction

7D1T chain M against the predicted model P12312: TM-score 0.93, RMSD 0.59 Å
7D1T chain M against the predicted model P12312: TM-score 0.93, RMSD 0.59 Å
8GN1 chain M against the predicted model P12312: TM-score 0.93, RMSD 0.58 Å
5B66 chain M against the predicted model P12312: TM-score 0.93, RMSD 0.59 Å
3WU2 chain M against the predicted model P12312: TM-score 0.93, RMSD 0.61 Å
3WU2 chain M against the predicted model P12312: TM-score 0.93, RMSD 0.61 Å
7D1U chain M against the predicted model P12312: TM-score 0.92, RMSD 0.62 Å
8GN2 chain M against the predicted model P12312: TM-score 0.92, RMSD 0.61 Å
7COU chain M against the predicted model P12312: TM-score 0.91, RMSD 0.63 Å
7COU chain M against the predicted model P12312: TM-score 0.91, RMSD 0.63 Å

Elsewhere

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